Difference between revisions of "Soodeh Tirnaz"

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'''Journal publication'''
 
'''Journal publication'''
  
1. Hurgobin B, Golicz A, Bayer P, Chan K, '''Tirnaz S''', Dolatabadian A, Schiessl S, Samans B, Montenegro J, Parkin I, Pires J.C, Chalhoub B, King G, Snowdon R, Batley J and Edwards D. 2017. Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid ''Brassica napus''. Plant Biotechnology Journal 16: 1265-1274
+
1.'''Tirnaz S,''' Zhang Y, Batley J. 2020. Genome-wide mining of disease resistance gene analogs using conserved domains. In: Jain M., Garg R. (eds) Legume Genomics. Methods in Molecular Biology, vol 2107. Humana, New York, NY.
  
2. Alamery S, '''Tirnaz S''', Bayer P, Tollenaere R, Chaloub B, Edwards D and Batley J. 2017. Genome-wide identification and comparative analysis of NBS-LRR resistance genes in ''Brassica napus''. Crop and Pasture Science 69: 79-93.
+
2.'''Tirnaz S''', Batley J. 2020. The importance of plant pan-genome in breeding. Quantitative Genetics, Genomics and Plant Breeding, Second edition (Publisher CABI). In press.
  
3. Bayer P, Golicz A, '''Tirnaz S''', Chan K, Edwards D and Batley J. 2018. Variation in abundance of predicted resistance genes in the ''Brassica oleracea'' pan-genome.  Plant Biotechnology Journal In Press (accepted September 2018)
+
3.'''Tirnaz S''', Batley J. DNA methylation toward resistance improvement. 2019. Trends in Plant Science 24 (12): 1137-1150.
  
4. Sanjari S, Shobbar Z.S, Ebrahimi M, Hasanloo T, Sadat-Noori S.A, '''Tirnaz S'''. Chalcone synthase genes from milk thistle (''Silybum marianum''): isolation and expression analysis. 2015. Journal of Genetics, 94: 611-617.
+
4.'''Tirnaz S''', Batley J. Epigenetic modification: option or necessity. 2019. Molecular Plant 12:1309-1311.
  
5. '''Tirnaz S''', Shobbar Z.S, Mohamadi-Nejad G, Shahidi Bonjar G.H. Gene expression analysis of OsPP2C5, a candidate protein phosphatase involved in ABA signal transduction, under salt, drought and cold stress in rice. 2009. Journal of Agricultural Biotechnology. 1: 67-78.
+
5.Dolatabadian A, Bayer PE, '''Tirnaz S''', Hurgobin B, Edwards D, Batley J. Characterisation of disease resistance genes in the Brassica napus pangenome reveals significant structural variation. 2019. Plant Biotechnology Journal 1-14.
 +
 
 +
6. Bayer P, Golicz A, '''Tirnaz S''', Chan K, Edwards D and Batley J. 2018. Variation in abundance of predicted resistance genes in the ''Brassica oleracea'' pan-genome.  Plant Biotechnology Journal In Press (accepted September 2018)
 +
 
 +
7.Hurgobin B, Golicz A, Bayer P, Chan K, '''Tirnaz S''', Dolatabadian A, Schiessl S, Samans B, Montenegro J, Parkin I, Pires J.C, Chalhoub B, King G, Snowdon R, Batley J and Edwards D. 2017. Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid ''Brassica napus''. Plant Biotechnology Journal 16: 1265-1274
 +
 
 +
8.Alamery S, '''Tirnaz S''', Bayer P, Tollenaere R, Chaloub B, Edwards D and Batley J. 2017. Genome-wide identification and comparative analysis of NBS-LRR resistance genes in ''Brassica napus''. Crop and Pasture Science 69: 79-93.
 +
 
 +
9.Sanjari S, Shobbar Z.S, Ebrahimi M, Hasanloo T, Sadat-Noori S.A, '''Tirnaz S'''. Chalcone synthase genes from milk thistle (''Silybum marianum''): isolation and expression analysis. 2015. Journal of Genetics, 94: 611-617.
 +
 
 +
10.'''Tirnaz S''', Shobbar Z.S, Mohamadi-Nejad G, Shahidi Bonjar G.H. Gene expression analysis of OsPP2C5, a candidate protein phosphatase involved in ABA signal transduction, under salt, drought and cold stress in rice. 2009. Journal of Agricultural Biotechnology. 1: 67-78.
  
  
 
'''Conference Papers'''
 
'''Conference Papers'''
  
1. Chen, '''Tirnaz S'''., Guo Y, Sirault X, Stefanova K, Nelson M.N., Turner N.C, Salisbury P.A, Furbank R, Siddique K.M.H, Cowling W.A. (2014), “Drought and heat tolerance in ''Brassica rapa'' and ''B. napus'' at the early reproductive stage”, 18th Australian Research Assembly on Brassicas, Novotel Barossa Valley Resort, SA. 29 September-2 October 2014.
+
1.'''Tirnaz S''', Bayer PE, Inturrisi F, Neik TX, Yang H, Dolatabadian A, Zhang F, Severn-Ellis A, Patel DA, Pradhan A, Edwards D, Batley J. Genome-wide identification of resistance gene analogs in the Brassicaceae. PAGXXVIII USA. January 2020.
 +
 
 +
2.'''Tirnaz S''', Merce C, Bayer PE, Severn-Ellis A, Edwards D, Batley J. Characterisation of DNA methylation status in Brassica napus in response to Leptosphaeria maculans. PAGXXVIII USA. January 2020.
 +
 
 +
3.'''Tirnaz S''', Zhang Y, Neik TX, Severn-Ellis A, Bayer PE, Edwards D, Batley J. Identification of candidate resistance genes against blackleg in Brassica napus. PAGXXVIII USA. January 2020.
 +
 
 +
4.Rijzaani H, Bayer PE, '''Tirnaz S''', Batley J, Edwards D. A pangenome for banana. PAGXXVIII USA. January 2020. 
 +
 
 +
5.Hu H, Scheben A, Verpaalen B, '''Tirnaz S''', Bayer PE, Hodel R GJ, Batley J, Soltis DE, Soltis PS, Edwards D. The Amborella pangenome suggests gene presence/absence variation is associated with environmental adaptation. PAGXXVIII USA. January 2020.
 +
 
 +
6.Dolatabadian A, Bayer PE, '''Tirnaz S''', Hurgobin B, Edwards D, Batley J. Characterisation of Resistance Genes in the Brassica napus Pangenome. PAGXXVII USA. January 2019.
 +
 
 +
7.Scheben A, Bayer PE, Dolatabadian A, Golicz A, Hurgobin B, '''Tirnaz S''', Chon-Kit Chan K, Edwards D, Batley J. Brassica Pangenomes as a Novel Source of Disease Resistance Genes. PAGXXVII USA. January 2019.
 +
 
 +
8.Zhang Y, Neik TX, Severn-Ellis A, '''Tirnaz S''', Bayer PE, Edwards D, Batley J. Identification of Candidate Resistance Genes Against Blackleg in Brassica napus. PAGXXVII USA. January 2019.
 +
 
 +
9.Zhang F, Bayer PE, '''Tirnaz S''', Severn-Ellis A, Edwards D, Batley J. Resistance Genes in Wild Brassicaceae Species. PAGXXVII USA. January 2019.
 +
 
 +
10. Inturrisi F.C, '''Tirnaz S''', Bayer P.B, Neik T.X, Yang H, Dolatabadian A, Zhang F, Severn-Ellis A, Patel D.A, Pradhan A, Lee H.T, Edwards D. and Batley J. Genome-Wide Analysis of NBS-LRR Genes in the Brassicaceae and Applications for Breeding. PAG XXVI. 2018.
  
2. Chen S, '''Tirnaz S''', Guo Y, Sirault X, Stefanova K, Nelson M.N, Turner N.C, Salisbury P.A, Furbank R., Siddique K.M.H, Cowling W.A. (2014), “Characterization of drought and heat tolerance in ''Brassica rapa'' and ''Brassica napus'' at the early reproductive stage,” The 19th Crucifer Genetics Workshop and Brassica, Wuhan, China.
+
11. '''Tirnaz S''', Bayer P.E, Severn-Ellis A, Edwards D and Batley J. Genome-wide identification of disease resistance genes in the Brassicaceae and characterisation of their DNA methylation status in ''Brassica napus''. International plant epi/genetics symposium, Angers, France, 2018.
  
3. '''Tirnaz S''', Shobbar, Z.S, Mohamadi-Nejad, Koobaz P, Shahidi Bonjar, G.H. (2009), “Detection of OsPP2C5 gene expression, a protein phosphatase interfering in signalling ABA, under drought, salinity and cold stress in rice,” The 6th National Biotechnology Congress of Iran, Tehran, Iran.
+
12. '''Tirnaz S''', Bayer P.E, Severn-Ellis A, Edwards D and Batley J. Genome-wide identification of disease resistance genes in the Brassicaceae and characterisation of their DNA methylation status in ''Brassica napus''. Brassica 2018. meeting.
  
4. '''Tirnaz S''', Shobbar, Z.S, Mohamadi-Nejad G, Shahidi Bonjar, G.H. (2009), “Study of osmotic (salinity) stress effects on sodium and potassium ion uptake in different rice genotypes,” The Second Biotechnology Congress of Iran, Kerman, Iran.
+
13.'''Tirnaz S''', Bayer P.E, Edwards D and Batley J. Genome-wide identification of disease resistance genes in the Brassicaceae. Stromlo meeting, Canberra, Australia, 2018
  
5. Inturrisi F.C, '''Tirnaz S''', Bayer P.B, Neik T.X, Yang H, Dolatabadian A, Zhang F, Severn-Ellis A, Patel D.A, Pradhan A, Lee H.T, Edwards D. and Batley J. Genome-Wide Analysis of NBS-LRR Genes in the Brassicaceae and Applications for Breeding. PAG XXVI. 2018.
+
14.Chen, '''Tirnaz S'''., Guo Y, Sirault X, Stefanova K, Nelson M.N., Turner N.C, Salisbury P.A, Furbank R, Siddique K.M.H, Cowling W.A. (2014), “Drought and heat tolerance in ''Brassica rapa'' and ''B. napus'' at the early reproductive stage”, 18th Australian Research Assembly on Brassicas, Novotel Barossa Valley Resort, SA. 29 September-2 October 2014.
  
6. '''Tirnaz S''', Bayer P.E, Severn-Ellis A, Edwards D and Batley J. Genome-wide identification of disease resistance genes in the Brassicaceae and characterisation of their DNA methylation status in ''Brassica napus''. International plant epi/genetics symposium, Angers, France, 2018.
+
15.Chen S, '''Tirnaz S''', Guo Y, Sirault X, Stefanova K, Nelson M.N, Turner N.C, Salisbury P.A, Furbank R., Siddique K.M.H, Cowling W.A. (2014), “Characterization of drought and heat tolerance in ''Brassica rapa'' and ''Brassica napus'' at the early reproductive stage,” The 19th Crucifer Genetics Workshop and Brassica, Wuhan, China.
  
7. '''Tirnaz S''', Bayer P.E, Severn-Ellis A, Edwards D and Batley J. Genome-wide identification of disease resistance genes in the Brassicaceae and characterisation of their DNA methylation status in ''Brassica napus''. Brassica 2018. meeting.
+
16.'''Tirnaz S''', Shobbar, Z.S, Mohamadi-Nejad, Koobaz P, Shahidi Bonjar, G.H. (2009), “Detection of OsPP2C5 gene expression, a protein phosphatase interfering in signalling ABA, under drought, salinity and cold stress in rice,” The 6th National Biotechnology Congress of Iran, Tehran, Iran.
  
8. '''Tirnaz S''', Bayer P.E, Edwards D and Batley J. Genome-wide identification of disease resistance genes in the Brassicaceae. Stromlo meeting, Canberra, Australia, 2018
+
17.'''Tirnaz S''', Shobbar, Z.S, Mohamadi-Nejad G, Shahidi Bonjar, G.H. (2009), “Study of osmotic (salinity) stress effects on sodium and potassium ion uptake in different rice genotypes,” The Second Biotechnology Congress of Iran, Kerman, Iran.
.
 
  
 
==Contact Details==
 
==Contact Details==

Latest revision as of 03:57, 24 February 2020

Biography

Soodeh has a Bachelor degree in “Plant Protection” and a master degree in “Plant Biotechnology”. Since moving to Australia in 2013, she has worked as a Graduate Research Assistant at the School of Biological science and ARC centre of excellence in plant energy biology for three years. During that time, she worked on gene expression analysis in canola and genotyping Arabidopsis mutants. She has also been working as a Laboratory Demonstrator in UWA since 2016. She joined Batley’s Lab and started her PhD with Prof. Jaqueline Batley from mid-2016.

Research Interests

Epigenetic, Genomics, DNA methylation, Gene expression, Plant-pathogen interaction, Resistance Genes

Current Projects

Genome-wide identification of disease resistance gene analogs in the Brassicaceae and characterisation of their DNA methylation status in Brassica napus

Summary: The Brassicaceae family consists of a wide range of species, including important crop species from the Brassica genus, such as B. napus (canola). The production of crop species from the Brassicaceae is severely affected by the blackleg disease, caused by Leptosphaeria maculans. Plants employ resistance gene analogs (RGAs) to defeat pathogens. Nucleotide binding-site leucine-rich repeat (NBS-LRR), receptor-like kinases (RLK) and receptor-like proteins (RLP) are the main types of RGAs. Under stress conditions, the expression pattern of defence genes, including RGAs, is changed by epigenetic changes, including but not limited to DNA methylation and demethylation. As these changes can have a major impact on plants adaptation and plant resistance responses. The aim of my PhD project is genome-wide identification of RGAs on different species of the Brassicaceae family and investigating their evolution in this plant family. In addition, I will investigate the genome-wide DNA methylation changes in Brassica napus cultivars in response to the pathogen (i.e L. maculans) attack and their role in resistance response. The outcome of my project will provide a novel source of RGAs in the Brassicaceae and revealing the new aspect of plant-pathogen interaction and all together will help breeders toward resistance improvement.

Publications

Journal publication

1.Tirnaz S, Zhang Y, Batley J. 2020. Genome-wide mining of disease resistance gene analogs using conserved domains. In: Jain M., Garg R. (eds) Legume Genomics. Methods in Molecular Biology, vol 2107. Humana, New York, NY.

2.Tirnaz S, Batley J. 2020. The importance of plant pan-genome in breeding. Quantitative Genetics, Genomics and Plant Breeding, Second edition (Publisher CABI). In press.

3.Tirnaz S, Batley J. DNA methylation toward resistance improvement. 2019. Trends in Plant Science 24 (12): 1137-1150.

4.Tirnaz S, Batley J. Epigenetic modification: option or necessity. 2019. Molecular Plant 12:1309-1311.

5.Dolatabadian A, Bayer PE, Tirnaz S, Hurgobin B, Edwards D, Batley J. Characterisation of disease resistance genes in the Brassica napus pangenome reveals significant structural variation. 2019. Plant Biotechnology Journal 1-14.

6. Bayer P, Golicz A, Tirnaz S, Chan K, Edwards D and Batley J. 2018. Variation in abundance of predicted resistance genes in the Brassica oleracea pan-genome. Plant Biotechnology Journal In Press (accepted September 2018)

7.Hurgobin B, Golicz A, Bayer P, Chan K, Tirnaz S, Dolatabadian A, Schiessl S, Samans B, Montenegro J, Parkin I, Pires J.C, Chalhoub B, King G, Snowdon R, Batley J and Edwards D. 2017. Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus. Plant Biotechnology Journal 16: 1265-1274

8.Alamery S, Tirnaz S, Bayer P, Tollenaere R, Chaloub B, Edwards D and Batley J. 2017. Genome-wide identification and comparative analysis of NBS-LRR resistance genes in Brassica napus. Crop and Pasture Science 69: 79-93.

9.Sanjari S, Shobbar Z.S, Ebrahimi M, Hasanloo T, Sadat-Noori S.A, Tirnaz S. Chalcone synthase genes from milk thistle (Silybum marianum): isolation and expression analysis. 2015. Journal of Genetics, 94: 611-617.

10.Tirnaz S, Shobbar Z.S, Mohamadi-Nejad G, Shahidi Bonjar G.H. Gene expression analysis of OsPP2C5, a candidate protein phosphatase involved in ABA signal transduction, under salt, drought and cold stress in rice. 2009. Journal of Agricultural Biotechnology. 1: 67-78.


Conference Papers

1.Tirnaz S, Bayer PE, Inturrisi F, Neik TX, Yang H, Dolatabadian A, Zhang F, Severn-Ellis A, Patel DA, Pradhan A, Edwards D, Batley J. Genome-wide identification of resistance gene analogs in the Brassicaceae. PAGXXVIII USA. January 2020.

2.Tirnaz S, Merce C, Bayer PE, Severn-Ellis A, Edwards D, Batley J. Characterisation of DNA methylation status in Brassica napus in response to Leptosphaeria maculans. PAGXXVIII USA. January 2020.

3.Tirnaz S, Zhang Y, Neik TX, Severn-Ellis A, Bayer PE, Edwards D, Batley J. Identification of candidate resistance genes against blackleg in Brassica napus. PAGXXVIII USA. January 2020.

4.Rijzaani H, Bayer PE, Tirnaz S, Batley J, Edwards D. A pangenome for banana. PAGXXVIII USA. January 2020.

5.Hu H, Scheben A, Verpaalen B, Tirnaz S, Bayer PE, Hodel R GJ, Batley J, Soltis DE, Soltis PS, Edwards D. The Amborella pangenome suggests gene presence/absence variation is associated with environmental adaptation. PAGXXVIII USA. January 2020.

6.Dolatabadian A, Bayer PE, Tirnaz S, Hurgobin B, Edwards D, Batley J. Characterisation of Resistance Genes in the Brassica napus Pangenome. PAGXXVII USA. January 2019.

7.Scheben A, Bayer PE, Dolatabadian A, Golicz A, Hurgobin B, Tirnaz S, Chon-Kit Chan K, Edwards D, Batley J. Brassica Pangenomes as a Novel Source of Disease Resistance Genes. PAGXXVII USA. January 2019.

8.Zhang Y, Neik TX, Severn-Ellis A, Tirnaz S, Bayer PE, Edwards D, Batley J. Identification of Candidate Resistance Genes Against Blackleg in Brassica napus. PAGXXVII USA. January 2019.

9.Zhang F, Bayer PE, Tirnaz S, Severn-Ellis A, Edwards D, Batley J. Resistance Genes in Wild Brassicaceae Species. PAGXXVII USA. January 2019.

10. Inturrisi F.C, Tirnaz S, Bayer P.B, Neik T.X, Yang H, Dolatabadian A, Zhang F, Severn-Ellis A, Patel D.A, Pradhan A, Lee H.T, Edwards D. and Batley J. Genome-Wide Analysis of NBS-LRR Genes in the Brassicaceae and Applications for Breeding. PAG XXVI. 2018.

11. Tirnaz S, Bayer P.E, Severn-Ellis A, Edwards D and Batley J. Genome-wide identification of disease resistance genes in the Brassicaceae and characterisation of their DNA methylation status in Brassica napus. International plant epi/genetics symposium, Angers, France, 2018.

12. Tirnaz S, Bayer P.E, Severn-Ellis A, Edwards D and Batley J. Genome-wide identification of disease resistance genes in the Brassicaceae and characterisation of their DNA methylation status in Brassica napus. Brassica 2018. meeting.

13.Tirnaz S, Bayer P.E, Edwards D and Batley J. Genome-wide identification of disease resistance genes in the Brassicaceae. Stromlo meeting, Canberra, Australia, 2018

14.Chen, Tirnaz S., Guo Y, Sirault X, Stefanova K, Nelson M.N., Turner N.C, Salisbury P.A, Furbank R, Siddique K.M.H, Cowling W.A. (2014), “Drought and heat tolerance in Brassica rapa and B. napus at the early reproductive stage”, 18th Australian Research Assembly on Brassicas, Novotel Barossa Valley Resort, SA. 29 September-2 October 2014.

15.Chen S, Tirnaz S, Guo Y, Sirault X, Stefanova K, Nelson M.N, Turner N.C, Salisbury P.A, Furbank R., Siddique K.M.H, Cowling W.A. (2014), “Characterization of drought and heat tolerance in Brassica rapa and Brassica napus at the early reproductive stage,” The 19th Crucifer Genetics Workshop and Brassica, Wuhan, China.

16.Tirnaz S, Shobbar, Z.S, Mohamadi-Nejad, Koobaz P, Shahidi Bonjar, G.H. (2009), “Detection of OsPP2C5 gene expression, a protein phosphatase interfering in signalling ABA, under drought, salinity and cold stress in rice,” The 6th National Biotechnology Congress of Iran, Tehran, Iran.

17.Tirnaz S, Shobbar, Z.S, Mohamadi-Nejad G, Shahidi Bonjar, G.H. (2009), “Study of osmotic (salinity) stress effects on sodium and potassium ion uptake in different rice genotypes,” The Second Biotechnology Congress of Iran, Kerman, Iran.

Contact Details

Soodeh Tirnaz

Room 1.122, School of Biological Sciences, Faculty of Science

The University of Western Australia

Crawley, WA 6009, Perth, Australia

Email: soodeh.tirnaz@research.uwa.edu.au

Google Scholar Research Gate ORCID